Prediction of RNA Base Pairing Probabilities Using Massively Parallel Computers

We present an implementation of McCaskill's algorithm for computing the base pair probabilities of an RNA molecule for massively parallel message passing architectures. The program can be used to routinely fold RNA sequences of more than 10000 nucleotides. Applications to complete viral genomes are discussed.

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Year of publication:	1998-06
Authors:	Fekete, Martin ; Hofacker, Ivo L. ; Stadler, Peter F.
Institutions:	Santa Fe Institute
Subject:	RNA Secondary Structure Prediction \| Message Passing \| Parallel Computer

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Series:	Working Papers.
Type of publication:	Book / Working Paper
Source:	RePEc - Research Papers in Economics

Persistent link: https://www.econbiz.de/10005790955