Based on recent work by Fox and Andersen (2006), this paper describes substantial extensions to the effects package for R to construct effect displays for multinomial and proportional-odds logit models. The package previously was limited to linear and generalized linear models. Effect displays...

In this paper we give a general framework for isotone optimization. First we discuss a generalized version of the pool-adjacent-violators algorithm (PAVA) to minimize a separable convex function with simple chain constraints. Besides of general convex functions we extend existing PAVA...

An important component of quality control for statistical graphics software is the ability not only to test that code runs without errors, but also to test that code produces the right result. The simple way to test for the correct result in graphical output is to test whether a test file...

Directional data is ubiquitious in science. Due to its circular nature such data cannot be analyzed with commonly used statistical techniques. Despite the rapid development of specialized methods for directional statistics over the last fifty years, there is only little software available that...

This paper presents the R package anacor for the computation of simple and canonical correspondence analysis with missing values. The canonical correspondence analysis is specified in a rather general way by imposing covariates on the rows and/or the columns of the two-dimensional frequency...

In this article the MCPMod package for the R programming environment will be introduced. It implements a recently developed methodology for the design and analysis of dose-response studies that combines aspects of multiple comparison procedures and modeling approaches (Bretz et al. 2005). The...

Correspondence analysis (CA) is a popular method that can be used to analyse relationships between categorical variables. Like principal component analysis, CA solutions can be rotated both orthogonally and obliquely to simple structure without affecting the total amount of explained inertia. We...

This program is designed to improve causal inference via a method of matching that is widely applicable in observational data and easy to understand and use (if you understand how to draw a histogram, you will understand this method). The program implements the coarsened exact matching (CEM)...

Gene expression data can be associated with various clinical outcomes. In particular, these data can be of importance in discovering survival-associated genes for medical applications. As alternatives to traditional statistical methods, sophisticated methods and software programs have been...

Fechnerian scaling is a procedure for constructing a metric on a set of objects (e.g., colors, symbols, X-ray films, or even statistical models) to represent dissimilarities among the objects "from the point of view" of a system (e.g., person, technical device, or even computational algorithm)...