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  • Search: subject:"87.15.-v Biomolecules: structure and physical properties"
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87.15.-v Biomolecules: structure and physical properties 4 05.40.-a Fluctuation phenomena 1 63.20.Kr Phonon-electron and phonon-phonon interaction 1 64.70.Pf Glass transitions 1 68.35.Rh Phase transitions and critical phenomena 1 87.14.Gg DNA 1 87.15.Aa Theory and modeling 1 87.15.By Structure and bonding 1 87.15.He Dynamics and conformational changes 1 RNA 1 and Brownian motion 1 computer simulation 1 noise 1 random processes 1
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Ares, S. 1 Dias, C. L. 1 Grant, M. 1 Hennig, D. 1 Hui, S. 1 Starikov, E. B. 1 Sánchez, A. 1 Tang, L.-H. 1 Yamada, H. 1
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The European Physical Journal B - Condensed Matter and Complex Systems 4
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RePEc 4
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Modelling disorder: the cases of wetting and DNA denaturation
Ares, S.; Sánchez, A. - In: The European Physical Journal B - Condensed Matter and … 56 (2007) 3, pp. 253-258
We study the effect of the composition of the genetic sequence on the melting temperature of double stranded DNA, using some simple analytically solvable models proposed in the framework of the wetting problem. We review previous work on disordered versions of these models and solve them when...
Persistent link: https://www.econbiz.de/10009280646
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Quantum diffusion in polaron model of poly(dG)-poly(dC) and poly(dA)-poly(dT) DNA polymers
Yamada, H.; Starikov, E. B.; Hennig, D. - In: The European Physical Journal B - Condensed Matter and … 59 (2007) 2, pp. 185-192
We numerically investigate quantum diffusion of an electron in a model of poly(dG)-poly(dC) and poly(dA)-poly(dT) DNA polymers with fluctuation of the parameters due to the impact of colored noise. The randomness is introduced by fluctuations of distance between two consecutive bases along...
Persistent link: https://www.econbiz.de/10009281512
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Unfolding designable structures
Dias, C. L.; Grant, M. - In: The European Physical Journal B - Condensed Matter and … 50 (2006) 1, pp. 265-269
Among an infinite number of possible folds, nature has chosen only about 1000 distinct folds to form protein structures. Theoretical studies suggest that selected folds are intrinsically more designable than others; these selected folds are unusually stable, a property called the designability...
Persistent link: https://www.econbiz.de/10009280013
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Ground state and glass transition of the RNA secondary structure
Hui, S.; Tang, L.-H. - In: The European Physical Journal B - Condensed Matter and … 53 (2006) 1, pp. 77-84
RNA molecules form a sequence-specific self-pairing pattern at low temperatures. We analyze this problem using a random pairing energy model as well as a random sequence model that includes a base stacking energy in favor of helix propagation. The free energy cost for separating a chain into two...
Persistent link: https://www.econbiz.de/10009282446
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