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  • Search: subject:"Codon usage"
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Codon usage 4 Entropy 2 Genome 2 Cluster 1 Correlation 1 Correlations 1 Detrended distance distribution 1 Gene organisation 1 Genomic sequences 1 In silico 1 Information 1 Mean field 1 Nearest neighbor spacing distribution 1 Ribosome network 1 Spectral statistics 1 Transcription 1 Translation 1
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Danchin, Antoine 1 Frappat, L. 1 Geiger, O. 1 Gorban, Alexander 1 Higareda, M.F. 1 Mendoza, L. 1 Méndez-Sánchez, R.A. 1 Popova, Tatyana 1 Sciarrino, A. 1 Sorba, P. 1 Zinovyev, Andrey 1
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Physica A: Statistical Mechanics and its Applications 4
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Evidence of codon usage in the nearest neighbor spacing distribution of bases in bacterial genomes
Higareda, M.F.; Geiger, O.; Mendoza, L.; … - In: Physica A: Statistical Mechanics and its Applications 391 (2012) 4, pp. 1255-1269
difference in the codon usage. …
Persistent link: https://www.econbiz.de/10011064075
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Codon usage trajectories and 7-cluster structure of 143 complete bacterial genomic sequences
Gorban, Alexander; Popova, Tatyana; Zinovyev, Andrey - In: Physica A: Statistical Mechanics and its Applications 353 (2005) C, pp. 365-387
Three results are presented. First, we prove the existence of a universal 7-cluster structure in all 143 completely sequenced bacterial genomes available in Genbank in August 2004, and explained its properties. The 7-cluster structure is responsible for the main part of sequence heterogeneity in...
Persistent link: https://www.econbiz.de/10011063364
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Correlation matrix for quartet codon usage
Frappat, L.; Sciarrino, A.; Sorba, P. - In: Physica A: Statistical Mechanics and its Applications 351 (2005) 2, pp. 461-476
It has been argued that the sum of usage probabilities for codons, belonging to quartets, that have as third nucleotide C or A, is independent of the biological species for vertebrates. The comparison between the theoretical correlation matrix derived from these sum rules and the experimentally...
Persistent link: https://www.econbiz.de/10010590671
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From function to sequence, an integrated view of the genome texts
Danchin, Antoine - In: Physica A: Statistical Mechanics and its Applications 273 (1999) 1, pp. 92-98
The Darwinian triplet variation/selection/amplification made material systems evolve. Evolution created functions, that captured structures to be actualised. Finally, the blueprints for structures were imbedded into DNA sequences. The time course and orientation of this process has an important...
Persistent link: https://www.econbiz.de/10010664913
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