ARRIBAS-GIL, ANA; GASSIAT, ELISABETH; MATIAS, CATHERINE - In: Scandinavian Journal of Statistics 33 (2006) 4, pp. 651-671
This paper deals with parameter estimation in pair-hidden Markov models. We first provide a rigorous formalism for these models and discuss possible definitions of likelihoods. The model is biologically motivated and therefore naturally leads to restrictions on the parameter space. Existence of...