Newton's Lagrange's and Hamilton's equations of motion have been modified to include the effects of constraints, nonequilibrium fluxes, and gradients. These nonclassical equations provide estimates of the linear transport coefficients and, through nonlinear dissipative terms, can also simulate nonequilibrium steady states. To illustrate the modified equations of motion, we apply them to a simple three-oscillator problem. The new methods have also been used to study nonlinear problems with large coupled gradients. We describe two examples: the coupling of heat flow with rotation and the simulation of strong shockwaves in dense fluids.